The Microalgae Study Group, the Biotechnology Laboratory, Faculty of Biology, Universitas Gadjah Mada (UGM), successfully conducted a Bioinformatics Workshop titled “Bioinformatics Approaches to Genomic Research: RNA-Seq and Genome Sequencing”. The workshop was held from December 10 to December 13, 2024, and was attended by 17 participants, including lecturers, students, and professionals.
The workshop’s featured Afif Pranaya Jati, S.P., M.Sc., a Ph.D. candidate in the Department of Microbiology, Monash University, Australia as main speaker. The event aimed to provide participants with a comprehensive understanding of bioinformatics techniques for analyzing genomic and transcriptomic data. Participants were introduced to advanced methodologies for RNA-Seq data analysis, genome sequencing, gene mining, and hands-on application of bioinformatics software tools.
The workshop was officially opened on Friday, December 10, 2024, by the Head of the Tropical Biology Department, Abdul Razaq Chasani, S.Si., M.Si., Ph.D., at the Tropical Biology Auditorium, Faculty of Biology, UGM. The first day focused on theoretical aspects, including sampling techniques and sequencing quality control (QC), delivered by the primary speaker. Additional sessions included an online lecture by Matin Nuhamuda, S.Si., M.Sc., Ph.D., a lecturer from the Biotechnology Laboratory, Faculty of Biology, UGM, on the topic “Genome Mining—From Data to Insight.”
On the second day, participants explored the basics of sequencing and its application to metagenomics. The third day covered an introduction to whole-genome sequencing (WGS) and the interpretation of resulting data. On the final day, participants focused on RNA sequencing and data interpretation. Practical sessions utilized data from the NCBI database and real-time data interpretation by participants. Analyses were performed using the Galaxy EU platform, a web-based bioinformatics data analysis tool from Europe that is freely accessible.
The workshop concluded with remarks from Prof. Endang Semiarti and Dr. Eng. Thoriq Teja Samudra. Prof. Endang highlighted the workshop’s critical role in enhancing bioinformatics analytical skills, which are increasingly in demand. She expressed hopes for similar activities to be conducted in the future.
This workshop aimed to expand participants’ knowledge of genomic research across diverse fields such as health, agriculture, and biotechnology. The event aligned with Sustainable Development Goal (SDG) 4 on Quality Education by fostering excellence in human resource development through education. It also served as an approach to studying the biodiversity of life forms, contributing to SDG 14 (Life Below Water) and SDG 15 (Life on Land).