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  • SDG 4 : Provide Quality Education
  • SDG 4 : Provide Quality Education
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SDG 4 : Provide Quality Education

Gentalk 1 : Bioinformatics approach in genomic research and Whole Genome Sequencing (WGS)

News ReleaseStudent Activities Monday, 17 February 2025

On Friday, 14th of February 2025 at 1-1.30 PM, Gentalk 1 is held in the Laboratory of Genetics and Breeding, Faculty of Biology UGM. This program is targeted for all Formasigen members and Biology UGM students in general. Mrs. Ganies Riza Aristya, S.Si., M.Sc., Ph.D., as Formasigen’s supervisor lecturer, also attended this program. Gentalk is an active discussion and sharing session between alumni or senior student and Formasigen’s member about the undergraduate thesis they are working on. In the first Gentalk of this year, there are 3 speakers, which are Azizah Tyas Nugrahanty, S.Si., Lucia Arum Sekar Meysari, S.Si., and Tiara Putria Judith. Azizah Tyas Nugrahanty, S.Si and Lucia Arum Sekar Meysari, S.Si. are master students in the Faculty of Biology UGM batch 2023, while Tiara Putria Judith is a master student in the Faculty of Biology UGM batch 2024, all under the supervision of Mrs. Ganies Riza Aristya, S.Si., M.Sc., Ph.D. for their undergraduate thesis.


This program started with an opening from the Master of Ceremony, Andreas Wibisono, as a part of the Scientific Division of HomeoGenesis Cabinet, followed by an opening speech by Mrs. Ganies Riza Aristya, S.Si., M.Sc., Ph.D. as the supervisor lecturer of Formasigen. In the speech, Mrs. Ganies express her hope for this program to be held more consistently and better so that this program can be a vessel for knowledge sharing and discussion for all Faculty of Biology’s students. The next activity is a presentation from all three speakers about “ Bioinformatics approach in genomic research : Whole Genome Sequencing (WGS)” . This presentation contains the history of NGS (Next Generation Sequencing) which is a development from the previously known method, Sanger Sequencing. Unlike Sanger sequencing, NGS can detect the whole genome in a shorter time with high-throughput results. One of the applications for NGS is its usage for WGS (Whole Genome Sequencing). This presentation also introduced a website called usegalaxy as a free online platform for genome sequencing analysis. All participants are given a tutorial to access the website and follow instruction to analyse a sequence. After that, is the Q&A session followed by closing from the master of ceremony. With the success of the first Gentalk of this year, we hoped that this could be a good start to be a vessel for an interesting and beneficial discussion. We also hope that this program can give a better understanding about all the researches done by all the lecturers and their students in the Laboratory of Genetics and Breeding, Faculty of Biologi UGM. [Author: Formasigen]

Briefing Meeting for Sakura Science Exchange Program 2025, Faculty of Biology UGM

News Release Friday, 14 February 2025

Yogyakarta, February 13, 2024 – The Faculty of Biology, Universitas Gadjah Mada (UGM) held a release ceremony for the participants of the Sakura Science Exchange Program 2025 in the Yamagata University, Japan, on Thursday, February 13, 2024. The event, which was held in a hybrid manner, was attended by a number of faculty leaders, staff, and student participants of the program.

The Dean of the Faculty of Biology UGM, Prof. Dr. Budi Setiadi Daryono, M.Agr.Sc., in his remarks conveyed the importance of maintaining the good name of Indonesia and Universitas Gadjah Mada in front of the program participants. “Students are representatives of Indonesia and Universitas Gadjah Mada. During this program, you are asked to always maintain a disciplined attitude, be punctual, and help each other as participants. This is important to reflect the values ​​upheld by UGM,” he said.

During this period, the Faculty of Biology UGM sent 16 students, consisting of 8 students who received scholarships and 8 students who were self-funded. The departing students will take part in training at Yamagata University and get the opportunity to learn more about Japanese culture. During the program, participants will be accompanied by Vice Dean for Academic and Student Affairs, Prof. Dr. Bambang Retnoaji, M.Sc., and guidance from Prof. Jun Yokoyama, who will guide them while in Japan.

The event was also attended by the Head of the Undergraduate Study Program, Sukirno, M.Sc., Ph.D., OIA Manager, Nur Indah Septriani, M.Sc., Ph.D., and the Coordinator of Academic and Student Affairs, Emi Dwi Suryanti, M.Sc. along with staff and students participating in the program.

The Sakura Science Exchange Program 2025 is an important opportunity for students of the Faculty of Biology UGM to develop their knowledge and skills through international collaboration and introduction to the rich Japanese culture.

With this program, the Faculty of Biology UGM hopes to continue to strengthen international cooperation, open wider learning opportunities, and form students who are ready to contribute at the global level.

 

Faculty of Biology UGM and Leiden University Strengthen Research Collaboration through Guest Lecture on Genomics and Zebrafish

CooperationNews Release Thursday, 13 February 2025

Yogyakarta, February 13, 2024 – The Faculty of Biology at Universitas Gadjah Mada (UGM) successfully held a guest lecture titled “Exploring Genomics and the Role of Zebrafish as a Model Organism” on Thursday, February 13, 2024, at the Tropical Biology Auditorium, Faculty of Biology UGM. The guest lecture featured Prof. Dr. Herman Pieter Spaink, a Professor of Molecular Cell Biology from the Institute of Biology Leiden (IBL), Leiden University (LU), Netherlands. The session was moderated by Dr. Luthfi Nurhidayat, a lecturer in Animal Physiology at the Faculty of Biology UGM.


In his presentation, Prof. Herman highlighted the background of the zebrafish research collaboration between Leiden University and Faculty of Biology UGM, which has been ongoing since 2019. This collaboration was realized through the establishment of “Twin Labs UGM and LU”, a joint research facility dedicated to developing studies on bioactive components that contribute to health and nutrition.

Prof. Herman explained that zebrafish were chosen as the primary subject of this collaborative project due to their ease of cultivation and the significant genetic similarity they share with humans. Therefore, zebrafish serve as a model organism in health research to study various human diseases, including tuberculosis, diabetes, cancer, neurovascular diseases, immune disorders, and Alzheimer’s disease.

Additionally, Prof. Herman elaborated on several ongoing and completed projects with UGM, such as the use of robotic injection systems on zebrafish embryos and sequencing of various local fish species in Indonesia. He emphasized that this collaboration is of high strategic value as it optimizes the utilization of Indonesia’s bioactive components by combining Leiden University’s expertise in zebrafish screening, which has resulted in over 200 scientific publications.

At the end of the session, Prof. Herman expressed his hope that the collaboration between UGM and Leiden University will continue and bring significant benefits to both universities and countries. With increasingly close synergy, it is expected that the research produced will make a substantial contribution to the development of global science and health.

BIOENTRI 2025: Helping Students Determine Research Directions

News ReleaseStudent Activities Tuesday, 11 February 2025

Faculty of Biology UGM held Biology Open House and Introduction of Research Topics [BIOENTRI] 2025, an event that aims to introduce students to various research topics that can be an option in preparing a thesis, thesis, or dissertation. Through this activity, students have the opportunity to discuss directly with their supervisors according to their fields of expertise, so that they can gain a deeper understanding of the available research.


The event was officially opened on February 10, 2025 by the Dean of Faculty of Biology UGM, Prof. Dr. Budi Setiadi Daryono, M.Agr.Sc. The series of events continued with presentation sessions from lecturers in Room 1, Room 2, and Teaching Lab, as well as research poster exhibitions in the booths that have been provided. Through this forum, students are expected to find research topics that suit their interests and academic plans. BIOENTRI 2025 will run for four days, from February 10 to 13, 2025. This activity received high enthusiasm as evidenced by the presence of students from undergraduate to postgraduate levels.

With BIOENTRI 2025, Faculty of Biology UGM hopes to facilitate students in determining the direction of their research and strengthen the synergy between students and lecturers in the world of research.

BIOENTRI 2025 activities also directly contribute to the achievement of Sustainable Development Goals (SDGs), especially SDG number 4 on Quality Education and have a positive impact on achieving various other SDG targets, including the protection of biodiversity, ecosystem restoration (13, 14, 15), and improving community welfare through innovations in biotechnology and natural resource management (9, 11, 13).

Faculty of Biology Expands Double Degree Master’s and Doctoral Collaboration with the University of Leeds, UK

CooperationNews Release Tuesday, 4 February 2025

Yogyakarta, 3 February 2025 – The Faculty of Biology, Universitas Gadjah Mada (UGM) has once again strengthened its international collaboration with the University of Leeds through online discussions to follow up on the initiation of a double degree program at master’s and doctoral levels between the Faculty of Biology UGM and the Faculty of Science, University of Leeds. In this meeting, the University of Leeds was represented by Ms. Premilla Kanaphaty, Director for South East Asia Global Engagement Team. Meanwhile, from the Faculty of Biology UGM, Dr. Eko Agus Suyono, M.App.Sc., Vice Dean for Research, Community Service, Collaboration and Alumni Affairs; Sukirno, Ph.D., Head of Undergraduate Study Program; and Matin Nuhamunada, M.Sc., Ph.D., Secretary of the Office of International Affairs, Faculty of Biology, UGM.

Collaboration between the UGM Faculty of Biology and the University of Leeds has been established since 2022 through an undergraduate double degree program. Until now, seven International Undergraduate Program (IUP) students at the Faculty of Biology UGM have undertaken double degree studies at the University of Leeds. Through this discussion, the two institutions discussed the possibility of expanding the program to higher levels, namely master’s and doctoral levels.

Ms. Premilla Kanaphaty said that the University of Leeds is open to the potential for further collaboration with UGM, especially the Faculty of Biology. She emphasized that the collaborative relationships that have been ongoing over the last few years can become a strong foundation for developing broader academic collaboration. Furthermore, this double degree master’s and doctoral program is planned to receive support from the Indonesian Government’s Education Fund Management Institute (LPDP) scholarship.

This discussion is a strategic step in strengthening academic relations between the Faculty of Biology UGM and the University of Leeds. The initiation of this collaboration is in line with the Sustainable Development Goals (SDG 4) which aims to improve access and quality of higher education through international academic collaboration. Apart from that, this collaboration also supports SDG 17, which emphasizes the importance of partnerships between educational institutions in creating a positive impact on the development of science and human resources at the global level.

The Faculty of Biology, Universitas Gadjah Mada (UGM), through its flagship Gama Ayam research program, has launched a collaborative initiative to promote egg self-sufficiency in Indonesia. In partnership with KAGAMA East Kalimantan and local poultry farmers, the team is cultivating the MAHAR village chicken in Balikpapan, one of the buffer zones of the future capital city, IKN Nusantara. This initiative is a direct application of UGM’s research innovation. The MAHAR chicken strain originally developed at UGM’s Sawitsari Research Station has been the subject of continued research and refinement under the leadership of Prof. Dr. Budi Setiadi Daryono, M.Agr.Sc., Head of the Gama Ayam Research Team. The cultivation activities include egg collection, hatching, brooding, selection, and breeding to develop a robust and productive indigenous laying chicken strain. Drs. Lalu Fauzul Idhi, representing KAGAMA East Kalimantan, has played a key role in facilitating regional collaboration. Local farmers, including Mr. Sultan and his team, have already shown promising results, successfully raising the MAHAR chickens to the hundreds in a short period. To assess progress, the Gama Ayam team visited the Balikpapan site on February 12, 2025, represented by Prananda Imammuddin Dzaki, Yusuf Febrianta, and Prof. Budi. The visit focused on genetic monitoring, performance evaluation, and knowledge sharing related to hatching success and reproductive development. This program support Sustainable Development Goals (SDGs), especially SDGs No.8 on Decent Work and Economic Growth, by promoting village-based poultry farming; SDGs No.11 on Sustainable Cities and Communities, through local food production initiatives;and SDGs No 17 on Partnerships for the Goals, via committed collaboration between academia, alumni, and the farming community. The MAHAR chicken is projected to become Indonesia’s leading egg-laying village chicken strain, contributing significantly to Indonesia’s food resilience and rural economic empowerment.

Community ServiceNews Release Sunday, 2 February 2025

The Faculty of Biology, Universitas Gadjah Mada (UGM), through its flagship Gama Ayam research program, has launched a collaborative initiative to promote egg self-sufficiency in Indonesia. In partnership with KAGAMA East Kalimantan and local poultry farmers, the team is cultivating the MAHAR village chicken in Balikpapan, one of the buffer zones of the future capital city, IKN Nusantara.


This initiative is a direct application of UGM’s research innovation. The MAHAR chicken strain originally developed at UGM’s Sawitsari Research Station has been the subject of continued research and refinement under the leadership of Prof. Dr. Budi Setiadi Daryono, M.Agr.Sc., Head of the Gama Ayam Research Team. The cultivation activities include egg collection, hatching, brooding, selection, and breeding to develop a robust and productive indigenous laying chicken strain.

Drs. Lalu Fauzul Idhi, representing KAGAMA East Kalimantan, has played a key role in facilitating regional collaboration. Local farmers, including Mr. Sultan and his team, have already shown promising results, successfully raising the MAHAR chickens to the hundreds in a short period.

To assess progress, the Gama Ayam team visited the Balikpapan site on February 12, 2025, represented by Prananda Imammuddin Dzaki, Yusuf Febrianta, and Prof. Budi. The visit focused on genetic monitoring, performance evaluation, and knowledge sharing related to hatching success and reproductive development.

This program support Sustainable Development Goals (SDGs), especially SDGs No.8 on Decent Work and Economic Growth, by promoting village-based poultry farming; SDGs No.11 on Sustainable Cities and Communities, through local food production initiatives;and SDGs No 17 on Partnerships for the Goals, via committed collaboration between academia, alumni, and the farming community.

The MAHAR chicken is projected to become Indonesia’s leading egg-laying village chicken strain, contributing significantly to Indonesia’s food resilience and rural economic empowerment.

Developing a Master Plan for Research and Community Service: Faculty of Biology UGM’s 2025 Initiative with Full Participation of All Lecturers

News Release Friday, 31 January 2025

Yogyakarta, January 31, 2025 – The Faculty of Biology, Universitas Gadjah Mada (UGM), held the Research, Community Service, Collaboration, and Alumni Workshop (Workshop P2MKSA) on Friday, January 31, 2025. The event took place at the Auditorium Biologi Tropika from 9:00 AM to 3:00 PM WIB and was attended by all lecturers of the Faculty of Biology UGM.


The workshop was officially opened by Dr. Eko Agus Suyono, M.App.Sc., Vice Dean for Research, Community Service, Collaboration, and Alumni Affairs, along with Prof. Dr. Budi Setiadi Daryono, M.Agr.Sc., Dean of the Faculty of Biology UGM. After the opening ceremony, a group photo session was held to document the event.

In his opening remarks, Dr. Eko Agus Suyono, M.App.Sc., stated that the workshop aims to gather input from lecturers regarding the 2024–2028 Master Plan for Research and Community Service at the Faculty of Biology UGM. This plan will later be submitted to the Faculty Senate for approval. Additionally, in the afternoon session, the P2MKSA team would provide an overview of various research and community service grants offered by the faculty.
“I highly appreciate the role of young lecturers in drafting this Master Plan and other programs. They are the next generation who will lead the Faculty of Biology toward greater progress and innovation,” he added.

Meanwhile, Prof. Dr. Budi Setiadi Daryono, M.Agr.Sc., emphasized that the Master Plan for Research and Community Service is crucial for supporting the faculty’s accreditation process, both for LAMSAMA and other accreditations.
“This Master Plan will be a strategic document that not only guides the faculty’s research and community service but also plays an important role in the accreditation process. With proper planning and the support of all lecturers, we can continuously improve the academic quality and contribution of the Faculty of Biology UGM, both nationally and internationally,” said Prof. Budi.

Discussion on the Master Plan for Research and Community Service

During the first session, participants received a presentation on the Master Plan for Research and Community Service delivered by Dr. Eko Agus Suyono, M.App.Sc., Dr. Fajar Sofyantoro, S.Si., M.Sc., Dr. Dwi Sendi Priyono, S.Si., M.Si., and Dr. Wiko Arif Wibowo, S.Si. This session provided insights into the research and community service direction to be developed by the Faculty of Biology UGM, highlighting innovations and strategies for implementing research outcomes in society.

Socialization of Research and Community Service Grants

After the break for prayer and lunch, the agenda continued with the Socialization of Research and Community Service Grants, led by Dr. Wiko Arif Wibowo, S.Si., and Dr. Aprilia Sufi Subiastuti, S.Si. The session covered various research and community service grant opportunities available for lecturers at the Faculty of Biology UGM.

The workshop concluded at 3:00 PM with a closing session by the Master of Ceremony. It is hoped that through this activity, all lecturers at the Faculty of Biology UGM will be more actively involved in impactful research and community service, as well as strengthen collaborative networks with various stakeholders.

The excitement of the International Summer Course Collaboration between Western Sydney University (WSU) and the Faculty of Biology UGM

CooperationNews Release Friday, 24 January 2025

Yogyakarta, 22 January 2025 – Faculty of Biology, Universitas Gadjah Mada (UGM) together with Western Sydney University (WSU) officially opened the International Summer Course (ISC) at the Tropical Biology Auditorium, Faculty of Biology UGM. This activity took place in two locations, at UGM, Yogyakarta on 21-23 January 2025 and continued in Tarakan, Kalimantan on 24 January – 8 February 2025.


The ISC opening event was attended by 16 WSU students, 6 UGM students, 3 WSU staff-lecturers, and UGM lecturers. The opening begins with a report from Dr. Eko Agus Suyono, Vice Dean for Research, Community Service, Collaboration and Alumni Affairs, Faculty of Biology UGM, who also acts as Chair of the International Summer Course Organizer. He revealed that this activity was a follow-up to the collaboration between UGM and WSU that had been established over the last few years.

In his speech, Prof. John Charles Hunt, WSU lecturer, hopes that this activity can continue and expand collaboration in the research and academic fields in the future. In line with that, Prof. Dr. Puji Astuti, Director of Partnerships and Global Relations at UGM, expressed her appreciation for this collaboration, and stated that this ISC is the second in January 2025 after collaboration with Monash University and the UGM Vocational School. Prof. Puji also appreciated the focus of the summer course which raised the issue of biodiversity and environmental sustainability as well as UGM’s role in supporting conservation in Kalimantan and Papua.

Dean of the Faculty of Biology UGM, Prof. Dr. Budi Setiadi Daryono also gave a speech and opened the event. He said that Yogyakarta is a special place with its rich culture and nature, and hopes that ISC participants can take advantage of the opportunity to explore various aspects during activities in Yogyakarta. Prof. Budi also emphasized that this ISC is the first in 2025, before the implementation of the regular ISC in July-August.

The event continued with a visit to the Biology Museum, Faculty of Biology UGM, guided by Donan Satria, M.Sc., Lecturer in Animal Systematics, Faculty of Biology. The participants were very enthusiastic in listening to explanations about the history, role and various collections in this museum.

Next, the participants carried out field activities at the Marine Research Station, Faculty of Biology, Porok Beach, Gunung Kidul. This activity includes intertidal sampling and observing biodiversity on the beach. The exploration was guided by Dr. Rury Eprilurahman who focuses on animals and Dr.Eng. Thoriq Teja Samudra regarding Macroalgae. Martin Holland, International Summer Course Coordinator from WSU, said that this field trip was a warm-up before the main summer course agenda in Tarakan, Kalimantan.

Through this ISC, it is hoped that collaboration between WSU and the Faculty of Biology UGM can become closer, opening up opportunities for further collaboration in the academic and research fields, as well as contributing to achieving Sustainable Development goals (SDGs). This activity is in line with SDG 14 (Life Below Water), SDG 15 (Life on Land), and SDG 17 (Partnerships for the Goals), which focus on biodiversity conservation, environmental sustainability, and international cooperation.

With this spirit of collaboration, it is hoped that similar activities can continue and strengthen relations between UGM and WSU, as well as support conservation and nature preservation efforts in Indonesia and globally.

All Heads of Laboratories at UGM Faculty of Biology Discuss the Master Plan for Research and Community Service

News Release Thursday, 23 January 2025

Monday, January 23, 2025 – The Faculty of Biology, Universitas Gadjah Mada (UGM), held a workshop titled “Master Plan for Research and Community Service of the Faculty of Biology 2024-2028”. The event took place from 9:00 AM to 11:00 AM WIB at the Auditorium Biologi Tropika, Faculty of Biology UGM.


The workshop was led by Dr. Eko Agus Suyono, M.App.Sc., Vice Dean for Research, Community Service, Collaboration, and Alumni. In his opening remarks, Dr. Eko emphasized the importance of the Faculty of Biology’s continuous contribution on the global stage.
“Communication and collaboration are the keys to becoming part of the global community. We must also keep up with the dynamic changes in the world,” he said.

The event was attended by the Dean, Vice Deans, all Heads of Laboratories, and the team of lecturers responsible for drafting the Master Plan for Research and the Master Plan for Community Service at the Faculty of Biology UGM. The workshop covered the fundamentals of master plan development, including the roadmap, development principles, implementation objectives and targets, strategic programs, and performance goals set for 2024–2028.

The Dean of the Faculty of Biology UGM, Prof. Dr. Budi Setiadi Daryono, M.Agr.Sc., also delivered his directives. He highlighted the importance of focusing on performance targets and optimizing available resources.”We must concentrate on achieving our targets and ensure the optimal management of our resources,” Prof. Budi emphasized.

The workshop aimed to develop a strategic plan for the Faculty of Biology UGM for the next five years, aligning with the university’s vision and mission. With this master plan, the Faculty of Biology is expected to enhance its contribution to research and community service, both nationally and internationally.

Exploring Biodiversity and Bioprospecting of Microalgae and Related Organisms Through Bioinformatics Approaches

News Release Tuesday, 21 January 2025

The Microalgae Study Group, the Biotechnology Laboratory, Faculty of Biology, Universitas Gadjah Mada (UGM), successfully conducted a Bioinformatics Workshop titled “Bioinformatics Approaches to Genomic Research: RNA-Seq and Genome Sequencing”. The workshop was held from December 10 to December 13, 2024, and was attended by 17 participants, including lecturers, students, and professionals.


The workshop’s featured Afif Pranaya Jati, S.P., M.Sc., a Ph.D. candidate in the Department of Microbiology, Monash University, Australia as main speaker. The event aimed to provide participants with a comprehensive understanding of bioinformatics techniques for analyzing genomic and transcriptomic data. Participants were introduced to advanced methodologies for RNA-Seq data analysis, genome sequencing, gene mining, and hands-on application of bioinformatics software tools.

The workshop was officially opened on Friday, December 10, 2024, by the Head of the Tropical Biology Department, Abdul Razaq Chasani, S.Si., M.Si., Ph.D., at the Tropical Biology Auditorium, Faculty of Biology, UGM. The first day focused on theoretical aspects, including sampling techniques and sequencing quality control (QC), delivered by the primary speaker. Additional sessions included an online lecture by Matin Nuhamuda, S.Si., M.Sc., Ph.D., a lecturer from the Biotechnology Laboratory, Faculty of Biology, UGM, on the topic “Genome Mining—From Data to Insight.”

On the second day, participants explored the basics of sequencing and its application to metagenomics. The third day covered an introduction to whole-genome sequencing (WGS) and the interpretation of resulting data. On the final day, participants focused on RNA sequencing and data interpretation. Practical sessions utilized data from the NCBI database and real-time data interpretation by participants. Analyses were performed using the Galaxy EU platform, a web-based bioinformatics data analysis tool from Europe that is freely accessible.

The workshop concluded with remarks from Prof. Endang Semiarti and Dr. Eng. Thoriq Teja Samudra. Prof. Endang highlighted the workshop’s critical role in enhancing bioinformatics analytical skills, which are increasingly in demand. She expressed hopes for similar activities to be conducted in the future.

This workshop aimed to expand participants’ knowledge of genomic research across diverse fields such as health, agriculture, and biotechnology. The event aligned with Sustainable Development Goal (SDG) 4 on Quality Education by fostering excellence in human resource development through education. It also served as an approach to studying the biodiversity of life forms, contributing to SDG 14 (Life Below Water) and SDG 15 (Life on Land).
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